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Lecture slides 2022¶

Day 1¶

  • Day 01: Welcome and practical information (TR)

  • Day 01: Fundamentals of molecular biology part 1 (RS)

  • Day 01: Fundamentals of molecular biology part 2 (RS)

  • Day 01: Fundamentals of molecular biology part 3 (RS)

  • Day 01: Sequencing and applications (TR)

  • Day 01: Illumina sequencing technology (AS)

  • Day 01: PacBio sequencing technology (ATK)

Day 2¶

  • Day 02: Oxford Nanopore sequencing technology (TH)

  • Day 02: Library preparation (AS)

  • Day 02: For all you seq - DNA

  • Day 02: For all you seq - RNA

  • Day 02: Experimental design (AS)

  • Day 02: Basic file formats (AS)

  • Day 02: Access to computational resources (TR)

Day 3¶

  • Day 03: Data preprocessing (AS)

  • Day 03: Data preprocessing script (text file) (AS)

Day 4¶

  • Day 04: De novo genome assembly - Course material on GitHub (KL)

  • Day 04: Principles and problems of de novo genome assembly (KL)

  • Day 04: Genome assembly programs - how do they work? (KL)

Day 5¶

  • Day 05: QUAST assembly evaluation (KL)

Day 6¶

  • Day 06: Introduction to variant calling (BS)

  • Day 06: Variant calling: Walrus mitochondrial genome exercise (BS)

  • Day 06: Human variant calling - Lecture (YS)

  • Day 06: Human variant calling - Exercise procedure (YS)

Day 7¶

  • Day 07: Somatic variant calling (SN)

Day 8¶

  • Day 08: Statistical genomics (IG)

Day 9¶

  • Day 09: Small RNA transcriptomics lecture (TBR)

  • Day 09: Small RNA transcriptomics practicals (TBR)

Day 10¶

  • Day 10: Machine learning in computational biology (MP)

Table of Contents

  • Lecture slides 2022
    • Day 1
    • Day 2
    • Day 3
    • Day 4
    • Day 5
    • Day 6
    • Day 7
    • Day 8
    • Day 9
    • Day 10

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